The introduction of next-generation sequencing has revolutionized molecular biology, and high-throughput sequencing systems are now commonly used in phylogenomic and metagenomic research. Though next-generation sequencing restricts the read-length of the process that ensures accuracy and fidelity, it does so while analyzing a significant number of amplified identical DNA strands. Because eukaryotic genomes include many repetitive areas, long DNA molecules must be split up into small parts, which could be a significant constraint of eukaryotic DNA sequencing. Third-generation sequencing techniques can sequence much longer reads than next-generation sequencing because they sequence single molecules instantly, resulting in a reformation in high-quality genome sequencing, enabling for unbiased, more precise classification and even higher taxonomic resolution than second-generation sequencing methodologies for gut microbiota research. The third generation of sequencing has surmounted the sophistication of short-read second-generation sequencing information assembly and the incapability to efficiently fix repeat sequences or huge genomic rearrangements; they all produce very long reads (1–100kb), which is unique from next-generation sequencing.
Figure 1. The principle and workflow of Nanopore sequencing. (Müller, 2019)
About Our Nanopore Long Read Sequencing Service
To assist your studies into gut microbiota, Creative Proteomics offers cutting-edge experimental protocols and algorithmic techniques for third-generation sequencing. Metagenomic sequencing, genome resequencing, genome de novo sequencing, transcriptome research, methylation identification, epigenomics experiments, disease-related variation detection, viral analysis, and other applications can all benefit from our third-generation sequencing services. We also provide services through third-generation sequencing and next-generation sequencing to obtain even more precise outcomes. Customized service will ensure the great quality of your subject and offer additional sparkly concepts for your studies, so please contact us to learn more about appropriate research strategies.
Workflow and Bioinformatics Analysis
|Remove redundant||Erase genetic redundancy, which occurs when two or more genes conduct the same purpose and inactivation of one of these genes has little or no effect on the biological phenotype.|
|Gene Functional Analysis||Recognising any functional element along a genome's DNA sequence, but with a focus on genes at first.|
|SNP Calling||Figuring bases that vary from the reference genome in genetic data, usually with a related confidence score or statistical evidence metric.|
|Gene Expression Analysis||Differential expression assessment and quantification of gene/transcript expression stages|
|Functional Enrichment Analysis||Categorizing gene or protein classes that are over-represented in a large number of genes or proteins and may be linked to disease phenotypes.|
|PPIs||Protein-protein interactions are detected and identified.|
Creative Proteomics is dedicated to providing the highest level of service to facilitate gut microbiota research. Our innovative ONT framework and services will be your best Full-Length Sequencing partner with their competence and dedication. For more details and a comprehensive quote, please do contact us.
1. Amarasinghe SL, Su S, Dong X, et al. Opportunities and challenges in long-read sequencing data analysis. Genome biology. 2020, 21(1).
2. Müller CA, Boemo MA, Spingardi P, et al. Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads. Nature methods. 2019, 16(5).
3. Kamathewatta KI, Bushell RN, Young ND, et al. Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing. PloS one. 2019, 14(5).
4. Nicholls SM, Quick JC, Tang S, Loman NJ. Ultra-deep, long-read nanopore sequencing of mock microbial community standards. Gigascience. 2019 May;8(5).
*For Research Use Only. Not for use in diagnostic procedures.
- Gut Microbiota Genomic Services
- 16S/18S/ITS Amplicon Sequencing
- Gut Microbiota Whole Genome Sequencing
- Metagenomic Sequencing
- Fecal Microbiome Profiling Service
- Gut Microbial Diversity Analysis Service
- Long-Read Sequencing
- DNA Microarray Services
- Virome Sequencing
- RT-PCR & DNA/RNA Synthesis
- Microbiome Analysis Services
- Gut Microbiota Metatranscriptomic Services
- Gut Microbiota Proteomics Services
- Gut Microbiota Metabolomics Services
- Gut Microbiota Bioinformatics Services
- Other Gut Microbiota Services
- CRISPR/Cas9 Gene Editing Service
- Model Organisms for Gut Microbiota Research
- RNAi Service
- Antibiotic Resistance Testing Services
- Flow Cytometry (FCM)-Based Analysis and Sorting Services
- Gut Microbiota Fluorescent in situ Hybridization (FISH) Service
- Gut Bioreactor Service
- Microfluidics Services for Gut Microbiome Research
- Western Blot Service for Gut Microbiome Research
- Gut Microbiota Genomic Services
- Gut Microbiota and Host Homeostasis
- Gut Microbiota and Diseases
- Gut Microbiota in Therapeutic and Diagnostic Research
- Targeted Monitoring of Gut Microbiota